The most thrilling high-speed tour on the San Diego Bay!
USS Midway on a San Diego Harbor Tour
Coronado Bridge on a San Diego Harbor Tour
Sea lions on a San Diego Harbor Tour
25 Miles of Coastline
Catch the sunset over the Bay
San Diego Harbor tour on the Spirit of San Diego

San Diego Harbor Cruise

Enjoy San Diego's scenic beauty and fascinating history aboard our professionally narrated sightseeing tours. Fun for the whole family!
  • Choose 1 or 2-hour narrated tour
  • Modern yacht with comfortable amenities
  • Spacious indoor & outdoor seating areas
  • Onboard snack bar with full service bar
  • Amazing photo opportunities

Book Online and Save! (use code FSWEB10)

The Ultimate San Diego Harbor Excursion

Choose San Diego's local favorite

Flagship's harbor cruises are the most beautiful, comfortable, educational way to enjoy the best of San Diego. Take in the sights, sounds and stories of the bay on a relaxing cruise. Enjoy a unique perspective on San Diego that you can only get from the water. Your professional local guide will share entertaining facts and history that helped to shape our city’s distinctive waterfront.

Our luxury ships feature three levels with comfortable indoor and outdoor seating, 360-degree views, and an onboard snack bar serving snacks, soda, beer, wine and cocktails. Our North Harbor and South Harbor tours explore unique scenic waterfront architecture, landmarks, sea life and spectacular photo opportunities. For the best value, choose the 2-hour combined tour and see it all! Now with free WiFi onboard.

Available Cruises Adult Child (4-12)* Senior/Military Book Now
North Harbor Tour (1 Hour)
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South Harbor Tour (1 Hour)
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Full Bay Tour (2 Hours)
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Departure Times

1 Hour Tour (North) 1 Hour Tour (South) 2 Hour Tour (Full Bay)
  • 10:00 AM - 11:00 AM
  • 12:30 PM - 1:30 PM
  • 3:00 PM - 4:00 PM
  • 5:30 PM - 6:30 PM*
  • 11:15 AM - 12:15 PM
  • 1:45 PM - 2:45 PM
  • 4:15 PM - 5:15 PM
  • 10:00 AM - 12:15 PM
  • 11:15 AM - 1:30 PM
  • 12:30 PM - 2:45 PM
  • 1:45 PM - 4:00 PM
  • 3:00 PM - 5:15 PM
  • 4:15 PM - 6:30 PM*
Boards 15 minutes prior to departure, all cruises are weather permitting.
*Summer Only (Memorial Day Weekend - October 28)

Before You Depart

  • Please be sure to allow enough travel time to arrive at our docks 15 minutes before your scheduled departure time.
  • The sun is always predictable, so don't forget sunscreen and a hat.
  • Our ship has comfortable indoor and outdoor seating areas.
  • Refreshments are available on board for purchase.
  • Our boats can fill up quickly! Book online to secure your spot.
  • Guests with wheelchairs can access the vessel and interior main deck. However, the exterior top deck and the restrooms are not ramp accessible.
  • For more, visit our FAQ.

Harbor Tour Routes

North Highlights:
  • The San Diego skyline, Star of India and the iconic ships of the Maritime Museum, Harbor Island, Shelter Island and North Island Naval Air Station.
South Highlights:
  • U.S.S. Midway Aircraft Carrier, U.S. Navy Surface Fleet, Coronado waterfront, Naval Amphibious Base Coronado (home of the Navy SEAL's) and the Coronado Bay Bridge.
Harbor Tour Routes Map